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IMAGEJ
Support is available on the mailing list and on the image.sc forum.Disclaimer
VISUALIZATION
Getting Started with Simple Visualization Options in ImageJ Pseudocolor Image Look-Up Tables (LUTs) A pseudocolor image is a single channel gray image (8, 16 or 32-bit) that has color assigned to it via a lookup table, i.e. a LUT.A LUT is a predefined table of gray values with matching red, green, and blue values so that shadows of gray are displayed as colorized pixels.SEGMENTATION
UPDATERV2 - IMAGEJSEE MORE ON IMAGEJ.NETSTRAIGHTEN...
ImageJ has a simple and effective tool for Straightening images of curved structures, which can be found in the menus as " Edit › Selection › Straighten". A silly example (straightening an MPI canteen banana) is shown here.KALMAN STACK FILTER
Kalman_Stack_Filter.java. Initial release. 23 May 2003. Latest version. 17 November 2006. Development status. stable (not yet in fiji update) Category. Filtering.SYNC WINDOWS
The Sync Windows plugin synchronizes mouse motion and input between multiple windows. Thus, an ROI drawn in one window is replicated in all other synchronized windows in the synchronized window set. A synchronization cursor (the red box above) indicates the location of the mouse in all synchronized windows.WAVEFRONT .OBJ
Development status. stable. This plugin will threshold a stack and create a surface using marchingcubes, and then save that as a Wavefront .OBJ file. There is an option to export surfaces in this format from the 3D Viewer but this option may still be useful for you in the following situations: If the 3D Viewer doesn't work for you (oris very slow)
BIGDATAVIEWER SCIJAVAKALMAN FILTER
Description: This plugin implements a recursive prediction/correction algorithm which is based on the Kalman Filter (commonly used for robotic vision and navigation) to remove high gain noise from time lapse image streams. These filters remove camera/detector noise while recovering faint image detail.IMAGEJ
Support is available on the mailing list and on the image.sc forum.Disclaimer
VISUALIZATION
Getting Started with Simple Visualization Options in ImageJ Pseudocolor Image Look-Up Tables (LUTs) A pseudocolor image is a single channel gray image (8, 16 or 32-bit) that has color assigned to it via a lookup table, i.e. a LUT.A LUT is a predefined table of gray values with matching red, green, and blue values so that shadows of gray are displayed as colorized pixels.SEGMENTATION
UPDATERV2 - IMAGEJSEE MORE ON IMAGEJ.NETSTRAIGHTEN...
ImageJ has a simple and effective tool for Straightening images of curved structures, which can be found in the menus as " Edit › Selection › Straighten". A silly example (straightening an MPI canteen banana) is shown here.KALMAN STACK FILTER
Kalman_Stack_Filter.java. Initial release. 23 May 2003. Latest version. 17 November 2006. Development status. stable (not yet in fiji update) Category. Filtering.SYNC WINDOWS
The Sync Windows plugin synchronizes mouse motion and input between multiple windows. Thus, an ROI drawn in one window is replicated in all other synchronized windows in the synchronized window set. A synchronization cursor (the red box above) indicates the location of the mouse in all synchronized windows.WAVEFRONT .OBJ
Development status. stable. This plugin will threshold a stack and create a surface using marchingcubes, and then save that as a Wavefront .OBJ file. There is an option to export surfaces in this format from the 3D Viewer but this option may still be useful for you in the following situations: If the 3D Viewer doesn't work for you (oris very slow)
BIGDATAVIEWER SCIJAVAKALMAN FILTER
Description: This plugin implements a recursive prediction/correction algorithm which is based on the Kalman Filter (commonly used for robotic vision and navigation) to remove high gain noise from time lapse image streams. These filters remove camera/detector noise while recovering faint image detail.IMAGEJ
Support is available on the mailing list and on the image.sc forum.Disclaimer
PLUGINS - IMAGEJ
The ImageJ Updater is the best way to install and update plugins. Simply add the update site containing your plugins of interest, and they will be installed automatically for you. If the plugin is not available via update site, but packaged as .jar file, or as unpackaged directory with .class files, see Installing plugins manually below.PLUGINS - IMAGEJ
Lumenera: Infinity USB 2.0 cameras (Mac only) Dage-MTI: Plugin for XLV, XL16 and XLM cameras (Windows only) Jenoptik: Mac and Windows plugins for ProgRes microscope cameras. AVerMedia: Plugins for DarkCrystal HD Capture cards (Windows only) iSight Capture: Webcam video capture using JavaCV and OpenCV.LICENSING - IMAGEJ
This is a read-only version of imagej.net, available during the transition to the new website, which you can preview here. Please direct any questions or issues to this Image.sc Forum thread. Thank you for your patience as we improve the website!STRAIGHTEN...
ImageJ has a simple and effective tool for Straightening images of curved structures, which can be found in the menus as " Edit › Selection › Straighten". A silly example (straightening an MPI canteen banana) is shown here.UPDATER - IMAGEJ
Founders People who created the project. Does not imply any current participation or responsibility. Leads People responsible for making decisions about the project: timing of releases, inclusion of features, etc.: Developers People responsible for adding new features or enhancements.: Debuggers People responsible for fixing bugs.: Reviewers People responsible for reviewing patch submissions.MORPHOLIBJ - IMAGEJ
MorphoLibJ is a collection of mathematical morphology methods and plugins for ImageJ, created at INRA-IJPB Modeling and Digital Imaging lab.. The library implements several functionalities that were missing in ImageJ, and that were not or only partially covered by otherplugins.
LINKS - IMAGEJ
µManager is an extensive software suite to interact with microscopes. It integrates nicely as an ImageJ plugin ( Plugins › Micro-Manager › Micro-Manager Studio ). OpenSPIM is an Open Access and Open Source project to make Single Plane Illumination Microscopy (SPIM) accessible to researchers working with, or on, SPIM technology.FILOQUANT - IMAGEJ
FiloQuant is a user friendly and modifiable tool for automated detection and quantification of filopodia properties such as lengthand density.
IMAGEJ WORKSHOPS
See the ImageJ Workshops page for details. Previous Workshop MaterialsIMAGEJ
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This is a read-only version of imagej.net, available during the transition to the new website, which you can preview here.
Please direct any questions or issues to this Image.sc Forum thread.
Thank you for your patience as we improve the website!WELCOME
IMAGEJ
AN OPEN PLATFORM FOR SCIENTIFIC IMAGE ANALYSISDownload
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Develop
ImageJ is an open source image processing program designed for scientific multidimensional images. ImageJ is highly extensible , with thousands of plugins and scripts for performing a wide variety of tasks, and a large user community . WELCOME TO THE WIKI! This wiki documents all aspects of the IMAGEJ ECOSYSTEM, including:ImageJ
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Open source
ImageJ is a tool for the scientific community.
To maintain transparency, the ImageJ application and its source code will always be freely available.Reproducible
Powerful tools such as the Script Editor and personal update sites help you develop and share reproducible analysis workflows.Interoperable
ImageJ is not an island . Use the best tool for the job, including KNIME , ITK , MATLAB , and a multitude of scripting languages.JOIN THE COMMUNITY
Image.sc Forum
A great place to ask and answer questions, and become part of the community that has driven ImageJ's success.GitHub Issues
The ImageJ team uses GitHub for bug reports, technical suggestions and feature requests.Contact and Help
For more ways to communicate: mailing lists , chatservices and more.
------------------------- ImageJ is developed by contributors worldwide . This web site is hosted by LOCI at the University ofWisconsin-Madison.
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