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PDBML SCHEMA RESOURCES PDBML Schema Resources. The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary Other data dictionaries used bythe PDB
WORLDWIDE PROTEIN DATA BANK Data items in the ATOM_SITE category record details about the atom sites in a macromolecular crystal structure, such as the positional coordinates, atomic displacement parameters, magnetic STRUCTURAL BIOLOGY KNOWLEGEBASESBKB Structural Biology KnowlegebaseSBKB - SBKB. Since 2000, the Protein Structure Initiative (PSI) supported the development of new technologies and methods that improve the throughput of protein structure determination. This effort resulted in the deposition of nearly 7000 protein structures to the Protein Data Bank, and thecreation of over 20
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PDBML SCHEMA RESOURCES PDBML Schema Resources. The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary Other data dictionaries used bythe PDB
WORLDWIDE PROTEIN DATA BANK Data items in the ATOM_SITE category record details about the atom sites in a macromolecular crystal structure, such as the positional coordinates, atomic displacement parameters, magnetic STRUCTURAL BIOLOGY KNOWLEGEBASESBKB Structural Biology KnowlegebaseSBKB - SBKB. Since 2000, the Protein Structure Initiative (PSI) supported the development of new technologies and methods that improve the throughput of protein structure determination. This effort resulted in the deposition of nearly 7000 protein structures to the Protein Data Bank, and thecreation of over 20
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MILESTONES DOCUMENTATION : METRICS PSI Milestones Documentation Protein Structure Initiative (PSI) Steering Subcommittee on Goals and Milestones January 2007 (updated 8.30.07) Steering Subcommittee on Goals and Milestones: Chair: Gaetano Montelione Members: Helen M. Berman, David Eisenberg, Wayne Hendrickson, Andrzej Joachimiak, George Phillips, Janna Wehrle, Stephen Burley, Ian Wilson Advisor: Steven Brenner SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence USER DOCUMENTATION : METRICS Metrics User Documentation. The PSI:Biology Metrics resource tracks the research efforts made the PSI:Biology Network. This user guide describes the source of the data presented on this resource .Much of the information is taken from the experimental data tracking database, TargetTrack, as well as the PSI:Biology Materials Repository, the Structural Biology Knowledgebase (SBKB), the SBKB CATEGORY GROUP INDEX MMCIF_PDBX.DIC PDBx/mmCIF Data Dictionary Category Group Index mmcif_pdbx.dic DATA CATEGORY DIFFRN_REFLN _diffrn_refln.diffrn_id set1 _diffrn_refln.id 1102 _diffrn_refln.wavelength_id Cu1fixed _diffrn_refln.angle_chi 32.21 _diffrn_refln.angle_kappa 20.12 _diffrn_refln.angle_omega 11.54 _diffrn_refln.angle_phi 176.02 _diffrn_refln.angle_psi 0.00 _diffrn_refln.angle_theta 23.08 _diffrn_refln.attenuator_code 'Ni.005' _diffrn_refln.counts_bg_1 22 _diffrn_refln.counts_bg_2 25 DATA ITEM _PDBX_SOLN_SCATTER.MEAN_GUINER_RADIUS_ESD The estimated standard deviation for the mean radius of structural elongation of the sample. In a given solute-solvent contrast, the radius of gyration R_G is a measure of structural elongation if the internal inhomogeneity of scattering densities has no effect.HOME : METRICS
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SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence identity to an existing DATA ITEM _ENTITY.ID The value of _entity.id must uniquely identify a record in the ENTITY list. Note that this item need not be a number; it can be any uniqueidentifier.
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SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence identity to an existing DATA ITEM _ENTITY.ID The value of _entity.id must uniquely identify a record in the ENTITY list. Note that this item need not be a number; it can be any uniqueidentifier.
SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence MILESTONES TABLES : METRICS PSI-2 grant year 2005: PSI-2 structures deposited between July 1, 2005 and July 1, 2006 PSI-2 grant year 2006: PSI-2 structures deposited between July 1, 2006 and July 1, 2007HOME : METRICS
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STRUCTURAL BIOLOGY KNOWLEGEBASESBKB Structural Biology KnowlegebaseSBKB - SBKB. Since 2000, the Protein Structure Initiative (PSI) supported the development of new technologies and methods that improve the throughput of protein structure determination. This effort resulted in the deposition of nearly 7000 protein structures to the Protein Data Bank, and thecreation of over 20
PDBML SCHEMA RESOURCES PDBML Schema Resources. The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary Other data dictionaries used bythe PDB
PDBX/MMCIF DICTIONARY RESOURCES PDBx/mmCIF Dictionary Resources. This site provides information about the format, dictionaries and related software tools used by the Worldwide Protein Data Bank ( wwPDB) to define data content for depositon, annotation and archiving of PDB entries. Browse the currentdictionary ».
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SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence identity to an existing DATA ITEM _ENTITY.ID The value of _entity.id must uniquely identify a record in the ENTITY list. Note that this item need not be a number; it can be any uniqueidentifier.
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STRUCTURAL BIOLOGY KNOWLEGEBASESBKB Structural Biology KnowlegebaseSBKB - SBKB. Since 2000, the Protein Structure Initiative (PSI) supported the development of new technologies and methods that improve the throughput of protein structure determination. This effort resulted in the deposition of nearly 7000 protein structures to the Protein Data Bank, and thecreation of over 20
PDBML SCHEMA RESOURCES PDBML Schema Resources. The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary Other data dictionaries used bythe PDB
PDBX/MMCIF DICTIONARY RESOURCES PDBx/mmCIF Dictionary Resources. This site provides information about the format, dictionaries and related software tools used by the Worldwide Protein Data Bank ( wwPDB) to define data content for depositon, annotation and archiving of PDB entries. Browse the currentdictionary ».
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SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence identity to an existing DATA ITEM _ENTITY.ID The value of _entity.id must uniquely identify a record in the ENTITY list. Note that this item need not be a number; it can be any uniqueidentifier.
SUMMARY TABLE : METRICS Summary Statistics for the PSI-2 Program. Summary of Measures of Success for Experimental Structure Determination and Modeling Leverage as Described in the Goals and Milestones Documentation Distinct Structures: Structures with less than 98% sequence identity to an existing structure at the time of PDB deposition Novel Structures: Structures with less than 30% sequence MILESTONES TABLES : METRICS PSI-2 grant year 2005: PSI-2 structures deposited between July 1, 2005 and July 1, 2006 PSI-2 grant year 2006: PSI-2 structures deposited between July 1, 2006 and July 1, 2007Toggle navigation
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